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manifest.toml

NAME

manifest.toml - declarative environment configuration format

SYNOPSIS

The manifest.toml file is a declarative format for specifying the packages installed in an environment, environment variables to make available to the environment, a shell script to run upon activation of the environment, and other options to change the behavior of the environment.

DESCRIPTION

Flox environments come with a declarative manifest in TOML format. An environment can be defined entirely by this one file. The file is divided into just a few sections that are represented as TOML tables:

[install]

The [install] table is the core of the environment, specifying which packages you’d like installed in the environment. An example of the [install] table is shown below:

[install]
ripgrep.pkg-path = "ripgrep"
pip.pkg-path = "python310Packages.pip"

Since this is TOML, equivalent ways of writing this would be

[install]
ripgrep = { pkg-path = "ripgrep" }
pip = { pkg-path = "python310Packages.pip" }

or

[install.ripgrep]
pkg-path = "ripgrep"

[install.pip]
pkg-path = "python310Packages.pip"

Flox will use the first format by default when automatically editing the manifest.

Package names

Packages are organized in a hierarchical structure such that certain packages are found at the top level (e.g. ripgrep), and other packages are found under package sets (e.g. python310Packages.pip). We call this location within the catalog the “pkg-path”.

The pkg-path is searched when you execute a flox search command. The pkg-path is what’s shown by flox show. Finally, the pkg-path appears in your manifest after a flox install.

[install]
ripgrep.pkg-path = "ripgrep"
pip.pkg-path = "python310Packages.pip"

Package descriptors

Each entry in the [install] table is a key-value pair. The key in the key-value pair (e.g. ripgrep, pip) is referred to as an “install ID”, and represents the name by which you will refer to a particular package e.g. if you wanted to uninstall or upgrade the package. Install IDs are inferred from the last attribute in the pkg-path, but may also be specified either at install-time via the -i option or interactively via flox-edit(1).

The value in the key-value pair is called a “package descriptor”. A package is specified by a number of available options which are separate from the install ID, so you are free to change them independently of one another. This allows you to change package details while keeping a stable install ID, for example upgrading from gcc.pkg-path = "gcc12" to gcc.pkg-path = "gcc13".

The descriptor options allow you to specify in detail the package to install. The full list of descriptor options are shown below:

Descriptor ::= {
  name               = null | <STRING>
, optional           = null | <BOOL>
, pkg-group          = null | <STRING>
, version            = null | <STRING>
, semver             = null | <STRING>
, systems            = null | [<STRING>, ...]
, pkg-path           = null | <STRING> | [<STRING>, ...]
, abs-path           = null | <STRING> | [<STRING>, ...]
, priority           = null | <INT>
}

None of these options are required, and leaving them unset instructs Flox to simply find the best match for the package name and latest version given the install ID. If you omit all options, setting package = {}, the install ID will be used as the pkg-path. This behavior is subject to change and is not recommended.

By specifying some of these options you create a set of requirements that the installed program must satisfy, otherwise installation will fail. The most common option will likely be the semver option, which allows you to specify a semantic version range.

Each option is described below:

name
Matches either the last attribute of the pkg-path or the package metadata fields name or pname as set by the catalog. This option is mutually exclusive with the pkg-path and abs-path options. You shouldn’t need to use this option and should instead prefer the pkg-path option.

optional
Marks this package as an optional requirement for the environment. By default an environment will fail to build if a specified package can’t be found in the catalog. However, some packages are platform specific and will never be found in the catalog for some systems. Thus, the way you mark a package as platform specific is by setting optional = true or using the systems option to list the systems on which the package is required.

pkg-group
Marks a package as belonging to a pkg-group.

Adding packages to a pkg-group ensures all packages in the pkg-group share the same libraries and dependencies, which ensures maximum compatibility and minimizes the size of the environment. One example is C/C++ projects that depend on specific versions of header files. Packages are marked as belonging to a pkg-group simply by setting this option to the name of the pkg-group.

Multiple pkg-groups may resolve to the same version of the catalog. Pkg-groups are upgraded as a unit, ensuring that the packages within the pkg-group continue to work together. See flox-upgrade(1) for more details on how pkg-groups and packages interact during upgrades.

version
Requires that the package match either an exact version or a semver range. When the first character of the version string is ‘=’ the version must be an exact match, otherwise the version string is matched as a semver range. Versions that don’t conform to semver must be specified with ‘=’.

The semantic version can be specified with the typical qualifiers such as ^, >=, etc. Semantic versions that do not specify all three fields (MAJOR.MINOR.PATCH) will treat the unspecified fields as wildcards. This instructs Flox to find the latest versions for those fields. For example version = "1.2" would select the latest version in the 1.2.X series.

This option is mutually exclusive with the semver option.

semver
This option is similar to version except it only allows semantic versions.

systems
A list of systems on which to install this package. When omitted this defaults to the same systems that the manifest specifies that it supports via options.systems.

pkg-path
The abbreviated location of a package within a catalog. A pkg-path is a sequence of one or more attributes joined by a delimiter. For example, both ripgrep and python310Packages.pip are pkg-paths. A pkg-path that contains more than one attribute can be represented as either a single string that contains a ‘.’-delimited sequence of the attributes, or it can be represented as a TOML array of strings where each string is an attribute. For example, both "python310Packages.pip" and ["python310Packages", "pip"] are equivalent for the pkg-path option.

This option is mutually exclusive with abs-path.

abs-path
The fully-qualified location of a package within a catalog. For the ripgrep package in the Flox base catalog for an x86_64-linux system this would be legacyPackages.x86_64-linux.ripgrep. Note that “legacyPackages” has nothing to do packages being out of date, and instead has to do with internal Flox implementation details. The abs-path can be specified for all systems by using * or null as the system.

You should rarely ever need this option and should instead prefer the pkg-path option.

priority
A priority used to resolve file conflicts where lower values indicate higher priority.

Each package internally has /bin, /man, /include, and other directories for the files they provide. These directories from all packages in the environment are merged when building the environment. Two packages that provide the same /bin/foo file cause a conflict, and it’s ambiguous which file should ultimately be placed into the environment. Such conflicts can be resolved by assigning different priorities to the conflicting packages.

The default priority is 5. Packages with a lower priority value will take precedence over packages with higher priority values.

[vars]

The [vars] section allows you to define environment variables for your environment that are set during environment activation. The environment variables specified here cannot reference one another. The names and values of the environment variables are copied verbatim into the activation script, so capitalization will be preserved.

Example:

[vars]
DB_URL = "http://localhost:2000"
SERVER_PORT = "3000"

[profile]

The [profile] section of the manifest allows you to specify scripts that will be sourced by your shell immediately after activating the environment. These scripts can be used to perform additional setup for a consumer of the environment e.g. spawning a background process, dynamically setting environment variables, or creating files and directories. The environment variables declared in the [vars] section can be used in the profile scripts.

[profile]
common = """
    export SERVER_URL="http://localhost:$SERVER_PORT"
"""

bash = """
    export MYSHELL="bash"
"""

zsh = """
    export MYSHELL="zsh"
"""

The profile.common script is intended to be common setup that can be sourced by any shell, but it is your responsibility to make sure that the script is compatible with any shells that may consume the environment. The profile.bash and profile.zsh scripts are sourced after the profile.common script, and are only sourced by the corresponding shell. The shell-specific profile scripts are intended to contain any shell functions, aliases, variables, etc that could be specific to a user’s shell.

[hook]

The [hook] section of the manifest allows you to specify scripts that are executed after the profile scripts have been sourced. Since hooks run after activation, the environment variables in the [vars] section may be referenced within the hook, as well as anything sourced from the profile scripts. There is currently only one hook defined for use, the on-activate hook.

on-activate

The on-activate script is executed non-interactively in a Bash subshell after the environment is activated. This is useful for environment initialization that you want done in a consistent shell so that you don’t need to worry about shell compatibility.

[hook]
on-activate = """
    mkdir -p data_dir
"""

Since the script runs in a sub-shell, it cannot modify environment variables in the user’s shell.

script - DEPRECATED

This script option was previously the only way to define a script that is sourced by the user’s interactive shell. This functionality has been replaced by the [profile] section. It will be removed in a later release.

[options]

The [options] section of the manifest details settings for the environment itself.

The most common option to set is systems, which specifies which systems the environment supports. A user that attempts to pull an environment from FloxHub when their environment isn’t explicitly supported will be prompted whether to automatically add their system to this list. See flox-pull(1) for more details.

The full set of options are listed below:

Options ::= {
  systems                   = null | [<STRING>, ...]
, allow                     = null | Allows
, semver                    = null | Semver
}

Allows ::= {
  unfree   = null | <BOOL>
, broken   = null | <BOOL>
, licenses = null | [<STRING>, ...]
}

Semver ::= {
  prefer-pre-releases = <BOOL>
}

systems
The whitelist of systems that this environment supports. Valid values are x86_64-linux, aarch64-linux, x86_64-darwin, and aarch64-darwin. flox init automatically populates this list with the current system type.

allow.unfree
Allows packages with unfree licenses to be installed and appear in search results. The default is false.

allow.broken
Allows packages that are marked broken in the catalog to be installed and appear in search results. The default is false.

allow.licenses
A whitelist of software licenses to allow in search results in installs. Valid entries are SPDX Identifiers.

semver.prefer-pre-releases
Whether to prefer pre-release software over stable versions for the purposes of search results and package installations. The default is false. Setting this value to true would prefer a package version 4.2.0-pre over 4.1.9.

SEE ALSO

flox-init(1), flox-install(1), flox-edit(1)